Nitrous oxide (N2O), a potent greenhouse gas that contributes significantly to climate change, is emitted mostly from soils by a suite of microbial metabolic pathways that are nontrivial to identify, and subsequently, to manage. Using either natural abundance or enriched stable isotope methods has aided in identifying microbial sources of N2O, but each approach has limitations. Here, we conducted a novel pairing of natural abundance and enriched assays on two dissimilar soils, hypothesizing this pairing would better constrain microbial sources of N2O. We incubated paired natural abundance and enriched soils from a corn agroecosystem and a subalpine forest in the laboratory at 10-95% soil saturation for 28 hr. The natural abundance method measured intramolecular site preference (SP) from emitted N2O, whereas the enriched method measured emitted 15N2O from soils amended with 15N-labelled substrate. The isotopic composition of emitted N2O was measured using a laser-based N2O isotopic analyzer, yielding three key findings. First, isotopic signatures from natural abundance and enriched N2O generally agreed in interpretation. Second, our novel pairing of isotopic methodologies refined understanding of microbial N-transformations in drier agricultural soil. In the 50% saturation agricultural soil, nitrification might have been deemed an important process based on SP alone, but enrichment helped reveal that its contribution to N2O emissions was minor. Finally, we quantified, to our knowledge for the first time, persistent (>50%) β-position-specific enrichment in emitted 15N2O, which is far in excess of SP-level fractionation expectations. This counter-intuitive enrichment pattern raises the possibility of previously unrecognized N-transformations in these soils.