In the tropical Pacific, weak ventilation and intense microbial respiration at depth give rise to a low dissolved oxygen (O2) environment that is thought to be ventilated primarily by the equatorial current system (ECS). The role of mesoscale eddies and diapycnal mixing as potential pathways of O2 supply in this region, however, remains poorly known due to sparse observations and coarse model resolution. Using an eddy resolving simulation of ocean circulation and biogeochemistry, we assess the contribution of these processes to the O2 budget balance and find that turbulent mixing of O2 and its modulation by mesoscale eddies contribute substantially to the replenishment of O2 in the upper equatorial Pacific thermocline, complementing the advective supply of O2 by the ECS and meridional circulation at depth. These transport processes are strongly sensitive to seasonal forcing by the wind, with elevated mixing of O2 into the upper thermocline during summer and fall when the vertical shear of the lateral flow and eddy kinetic energy are intensified. The tight link between eddy activity and the downward mixing of O2 arises from the modulation of equatorial turbulence by Tropical Instability Waves via their eddy impacts on the vertical shear. This interaction of ocean processes across scales sustains a local pathway of O2 delivery into the equatorial Pacific interior and highlights the need for adequate observations and model representation of turbulent mixing and mesoscale processes for understanding and predicting the fate of the tropical Pacific O2 content in a warmer and more stratified ocean.

Pinatubo erupted during the first decadal survey of ocean biogeochemistry, embedding its climate fingerprint into foundational ocean biogeochemical observations and complicating the interpretation of long-term biogeochemical change. Here, we quantify the influence of the Pinatubo climate perturbation on externally forced decadal and multi-decadal changes in key ocean biogeochemical quantities using a large ensemble simulation of the Community Earth System Model designed to isolate the effects of Pinatubo, which cleanly captures the ocean biogeochemical response to the eruption. We find increased uptake of apparent oxygen utilization and preindustrial carbon over 1993-2003. Nearly 100\% of the forced response in these quantities are attributable to Pinatubo. The eruption caused enhanced ventilation of the North Atlantic, as evidenced by deep ocean chlorofluorocarbon changes that appear 10-15 years after the eruption. Our results help contextualize observed change and contribute to improved constraints on uncertainty in the global carbon budget and ocean deoxygenation.

We examine the effects of the submesoscale in mediating the response to projected warming of phytoplankton new production and export using idealized biogeochemical tracers in a high-resolution regional model of the Porcupine Abyssal Plain region of the North Atlantic. We quantify submesoscale effects by comparing our control run to an integration in which submesoscale motions have been suppressed using increased viscosity. The warming climate over the 21st century reduces resolved submesoscale activity by a factor of 2-3. Annual new production is slightly reduced by submesoscale motions in a climate representative of the early 21st-century and slightly increased by submesoscale motions in a climate representative of the late 21st-century. Resolving the submesoscale, however, does not strongly impact the projected reduction in annual production under representative warming. Organic carbon export from the surface ocean includes both direct sinking of detritus (the biological gravitational pump) and advective transport mediated pathways; the sinking component is larger than advectively mediated transport by up to an order of magnitude across a wide range of imposed sinking rates. Submesoscales are responsible for most of the advective carbon export, however, which is thus largely reduced by a warming climate. In summary, our results demonstrate that resolving more of the submesoscale has a modest effect on present-day new production, a small effect on simulated reductions in new production under global warming, and a large effect on advectively-mediated export fluxes.

In this study we introduce a pair of idealized tracers to quantify how changes in physical advection and mixing under climate change affect the nutrient supply, new production, and particulate export rates. The low cost and simplicity of these tracers allows us to explore the sensitivity of the model biogeochemistry, and in particular its response to a changing physical environment, to the choice of model parameters. Using CESM2.1 with active ocean and ice only, at nominal one-degree resolution, under initial conditions and forcing representative of 2000 and 2100, our idealized nutrient and particulate are within the spread of nitrate and export from CMIP5 models. The simple form of the tracers allows us to identify the physical controls on the changing rates of supply, production, and export throughout the year, which together form the different seasonal cycles. We find that the ocean basins with the largest changes in the seasonal cycle over the 21st century are the North Atlantic, the Arctic, and the eastern tropical Pacific. We present results comparing the controls across basins, focusing on shifts in the timing of deepening mixed layers and maximum production rate in the northern North Atlantic through the Arctic, and changes in the spatial and temporal patterns of vertical advective exchange in the tropics and subtropics of the Pacific and Indian Oceans. In both cases we discuss how much these changes depend on the biogeochemical model parameter values.

In this study we introduce a pair of idealized tracers to quantify how changes in physical advection and mixing under climate change affect the nutrient supply, new production, and particulate export rates. The low cost and simplicity of these tracers allows us to explore the sensitivity of the model biogeochemistry, and in particular its response to a changing physical environment, to the choice of model parameters. Using CESM2.1 with active ocean and ice only, at nominal one-degree resolution, under initial conditions and forcing representative of 2000 and 2100, our idealized nutrient and particulate are within the spread of nitrate and export from CMIP5 models. The simple form of the tracers allows us to identify the physical controls on the changing rates of supply, production, and export throughout the year, which together form the different seasonal cycles. We find that the ocean basins with the largest changes in the seasonal cycle over the 21st century are the North Atlantic, the Arctic, and the eastern tropical Pacific. We present results comparing the controls across basins, focusing on shifts in the timing of deepening mixed layers and maximum production rate in the northern North Atlantic through the Arctic, and changes in the spatial and temporal patterns of vertical advective exchange in the tropics and subtropics of the Pacific and Indian Oceans. In both cases we discuss how much these changes depend on the biogeochemical model parameter values.

Biological processes in Southern Ocean surface waters have widespread impacts on global productivity and oceanic CO2 storage. Here, we demonstrate that biological calcification in the Southern Ocean exerts a strong control the global distribution of alkalinity. The signature of Southern Ocean calcification is evident in observations as a depletion of potential alkalinity within portions of Subantarctic Mode and Intermediate water. Experiments with an ocean general circulation model indicate that calcification and subsequent sinking of biogenic carbonate in this region effectively transfers alkalinity between the upper and lower cells of the meridional overturning circulation. Southern Ocean calcification traps alkalinity in the deep ocean; decreasing calcification permits more alkalinity to leak out from the Southern Ocean, yielding increased alkalinity in the upper cell and low-latitude surface waters. These processes have implications for the atmosphere-ocean partitioning of carbon. Reductions in Southern Ocean calcification increase the buffer capacity of surface waters globally, thereby enhancing the ocean’s ability to absorb carbon from the atmosphere. This study highlights the critical role of Southern Ocean calcification in determining global alkalinity distributions, demonstrating that changes in this process have the potential for widespread consequences impacting air-sea partitioning of CO2.

Global warming may modify submesoscale activity in the ocean through changes in the mixed layer depth and lateral buoyancy gradients. As a case study we consider a region in the Northeast Atlantic under present and future climate conditions, using a time-slice method and global and nested regional ocean models. The high resolution regional model reproduces the strong seasonal cycle in submesoscale activity observed under present-day conditions. In the future, with a reduction in the mixed layer depth, there is a substantial reduction in submesoscale activity and an associated decrease in kinetic energy at the mesoscale. The vertical buoyancy flux induced by submesoscale activity is reduced by a factor of 2. When submesoscale activity is suppressed, by increasing the parameterized lateral mixing in the model, the climate change induces a larger reduction in winter mixed layer depths while there is less of a change in kinetic energy at the mesoscale. A scaling for the vertical buoyancy flux proposed by Fox-Kemper et.\ al.\, based on the properties of mixed layer instability (MLI), is found to capture much of the seasonal and future changes to the flux in terms of regional averages as well as the spatial structure, although it over predicts the reduction in the flux in the winter months. The vertical buoyancy flux when the mixed layer is relatively shallow is significantly greater than that given by the scaling based on MLI, suggesting during these times other processes (besides MLI) may dominate submesoscale buoyancy fluxes.

Tropical Instability Vortices (TIVs) have a major influence on the physics and biogeochemistry of the equatorial Pacific. Using an eddy-resolving configuration of the Community Earth System Model (CESM-HR) and Lagrangian particle tracking, we examine TIV impacts on the three-dimensional structure and variability of dissolved oxygen (O2) in the upper equatorial Pacific water column. In CESM-HR, the simulated generation and westward propagation of TIVs from boreal summer through winter lead to the seasonal oxygenation of the upper northern equatorial Pacific, exhibited as a deepening of hypoxic depth west of 120ºW. TIV effects on the equatorial Pacific oxygen balance are dominated by eddy-advection and mixing, while indirect TIV effects on O2 consumption play minor roles. These advective effects reflect the transient displacements of isopycnals by eddy pumping as well as vortex transport of oxygen by eddy trapping, stirring, and subduction. TIVs influence on the upper equatorial Pacific O2 distribution and variability has important implications for understanding and modeling marine ecosystem dynamics and habitats, and should be taken into consideration in designing observation networks in this region.

The Marine Biogeochemistry Library (MARBL) is a prognostic ocean biogeochemistry model that simulates marine ecosystem dynamics and the coupled cycles of carbon, nitrogen, phosphorus, iron, silicon, and oxygen. MARBL is a component of the Community Earth System Model (CESM); it supports flexible ecosystem configuration of multiple phytoplankton and zooplankton functional types; it is also portable, designed to interface with multiple ocean circulation models. Here, we present scientific documentation of MARBL, describe its configuration in CESM2 experiments included in the Coupled Model Intercomparison Project version 6 (CMIP6), and evaluate its performance against a number of observational datasets. The model simulates an air-sea CO2 flux and many aspects of the carbon cycle in good agreement with observations. However, the simulated integrated uptake of anthropogenic CO2 is weak, which we link to poor thermocline ventilation, a feature evident in simulated chlorofluorocarbon distributions. This also contributes to larger-than-observed oxygen minimum zones. Moreover, radiocarbon distributions show that the simulated circulation in the deep North Pacific is extremely sluggish, yielding extensive oxygen depletion and nutrient trapping at depth. Surface macronutrient biases are generally positive at low latitudes and negative at high latitudes. CESM2 simulates globally-integrated net primary production (NPP) of 48 Pg C yr-1 and particulate export flux at 100 m of 7.1 Pg C yr-1. The impacts of climate change include an increase in globally-integrated NPP, but substantial declines in the North Atlantic. Particulate export is projected to decline globally, attributable to decreasing export efficiency associated with changes in phytoplankton community composition.

Large volcanic eruptions drive significant climate perturbations through major anomalies in radiative fluxes and the resulting widespread cooling of the surface and upper ocean. Recent studies suggest that these eruptions also drive important variability in air-sea carbon and oxygen fluxes. By simulating the Earth system using two initial-condition large ensembles, with and without the aerosol forcing associated with the Mt. Pinatubo eruption in June 1991, we isolate the impact of this event on ocean physical and biogeochemical properties. The Mt. Pinatubo eruption generated significant anomalies in surface fluxes and the ocean interior inventories of heat, oxygen, and carbon. Pinatubo-driven changes persist for multiple years in the upper ocean and permanently modify the ocean’s heat, oxygen, and carbon inventories. Positive anomalies in oxygen concentrations emerge immediately post-eruption and penetrate into the deep ocean. In contrast, carbon anomalies intensify in the upper ocean over several years post-eruption, and are largely confined to the upper 150 m. In the tropics and northern high latitudes, the change in oxygen is dominated by surface cooling and subsequent ventilation to mid-depths, while the carbon anomaly is associated with solubility changes and eruption-generated ENSO variability. Our results indicate that Pinatubo does not substantially impact oxygen or carbon in the Southern Ocean; forced signals do not emerge from the large internal variability in this region.

Climate impacts are not always easily discerned in wild populations as climate change occurs in the context of natural variability. Furthermore, species responses to climate change and variability differ among life histories. The time of emergence (ToE) identifies when the signal of anthropogenic climate change can be quantitatively distinguished from noise associated with natural variability. This concept has been applied extensively in the climate sciences, but has not yet formally been explored in the context of population dynamics. Here, we present a theoretical assessment of the ToE of climate-driven signals in population dynamics (ToEpop) to detect climate signals in populations. We identify the dependence of ToEpop on the magnitude of climate trends and variability and explore the demographic controls on ToEpop. We demonstrate that different life histories (fast species vs. slow species), demographic processes (survival, reproduction) and functional relationships between climate and demographic rates, yield population dynamics that filter trends and variability in climate differently. We illustrate empirically how to detect the point in time when anthropogenic signals in populations emerge from the envelope of natural variability for a species threatened by climate change: the emperor penguin. Finally, we propose six testable hypotheses and a road map for future research.