Gary Bending

and 5 more

The rhizosphere is a key interface between plants, microbes and the soil which influences plant health and nutrition and modulates terrestrial biogeochemical cycling processes. Recently it has been shown that the rhizosphere environment is far more dynamic than previously recognized, with evidence emerging for diurnal rhythmicity in rhizosphere chemistry and in the composition of rhizosphere microbial communities. Rhythmicity of the rhizosphere microbiome is in part linked to the host plant's circadian rhythm, although evidence also points to some heterotrophic rhizosphere bacteria and fungi possessing rhythmicity. We review the evidence for diurnal rhythmicity in the composition and abundance of rhizosphere microbial communities, and its link to the plant circadian clock. Factors which may drive microbial rhythmicity in the rhizosphere are discussed, including diurnal change in the flux and composition of root exudates, rhizosphere physico-chemical properties and plant immunity mechanisms. The potential contributions of microbial processes to community rhythmicity are considered, including self-sustained microbial rhythms, bacterial movement into and out of the rhizosphere, and microbe-microbe interactions. We also consider evidence that changes in microbial composition mediated by the plant circadian clock may affect microbial function and its significance for plant health and broader soil biogeochemical cycling processes. We identify key knowledge gaps and approaches which could help to resolve the spatial and temporal variation and functional significance of rhizosphere microbial rhythmicity. This includes unravelling the factors which determine the oscillation of microbial activity, growth and death, and cross-talk with the host over diurnal time frames. We conclude that diurnal rhythmicity is an inherent characteristic of the rhizosphere environment and that temporal factors should be considered and reported in experimental studies conducted on the rhizosphere.

Matthew Wade

and 29 more

The COVID-19 pandemic has put unprecedented pressure on public health resources around the world. From adversity opportunities have arisen to measure the state and dynamics of human disease at a scale not seen before. Early in the COVID-19 epidemic scientists and engineers demonstrated the use of wastewater as a medium by which the virus could be monitored both temporally and spatially. In the United Kingdom this evidence prompted the development of National wastewater surveillance programmes involving UK Government agencies academics and private companies. In terms of speed and scale the programmes have proven to be unique in its efforts to deliver measures of virus dynamics across a large proportion of the populations in all four regions of the country. This success has demonstrated that wastewater-based epidemiology (WBE) can be a critical component in public health protection at regional and national levels and looking beyond COVID-19 is likely to be a core tool in monitoring and informing on a range of biological and chemical markers of human health; some established (e.g. pharmaceutical usage) and some emerging (e.g. metabolites of stress). We present here a discussion of uncertainty and variation associated with surveillance of wastewater focusing on lessons-learned from the UK programmes monitoring COVID-19 but addressing the areas that can broadly be applied to WBE more generally. Through discussion and the use of case studies we highlight that sources of uncertainty and variability that can impact measurement quality and importantly interpretation of data for public health decision-making are varied and complex. While some factors remain poorly understood and require dedicated research we present approaches taken by the UK programmes to manage and mitigate the more tractable components. This work provides a platform to integrate uncertainty management through data analysis quality assurance and modelling into the inevitable expansion of WBE activities as part of One Health initiatives.