As the urgency to evaluate the impacts of climate change on marine ecosystems increases, there is a need to develop robust projections and improve the uptake of ecosystem model outputs in policy and planning. Standardising input and output data is a crucial step in evaluating and communicating results, but can be challenging when using models with diverse structures, assumptions, and outputs that address region-specific issues. We developed an implementation framework and workflow to standardise the climate and fishing forcings used by regional models contributing to the Fisheries and Marine Ecosystem Model Intercomparison Project (FishMIP) and to facilitate comparative analyses across models and a wide range of regions, in line with the FishMIP 3a protocol. We applied our workflow to three case study areas-models: the Baltic Sea Mizer, Hawai’i-based Longline fisheries therMizer, and the southern Benguela ecosystem Atlantis marine ecosystem models. We then selected the most challenging steps of the workflow and illustrated their implementation in different model types and regions. Our workflow is adaptable across a wide range of regional models, from non-spatially explicit to spatially explicit and fully-depth resolved models and models that include one or several fishing fleets. This workflow will facilitate the development of regional marine ecosystem model ensembles and enhance future research on marine ecosystem model development and applications, model evaluation and benchmarking, and global-to-regional model comparisons.

Climate change could irreversibly modify Southern Ocean ecosystems. Marine ecosystem model (MEM) ensembles can assist policy making by projecting future changes and allowing the evaluation and assessment of alternative management approaches. However, projected future changes in total consumer biomass from the Fisheries and Marine Ecosystem Model Intercomparison Project (FishMIP) global MEM ensemble highlight an uncertain future for the Southern Ocean, indicating the need for a region-specific ensemble. A large source of model uncertainty originates from the Earth system models (ESMs) used to force FishMIP models, particularly future changes to lower trophic level biomass and sea ice coverage. To build confidence in regional MEMs as ecosystem-based management tools in a changing climate that can better account for uncertainty, we propose the development of a Southern Ocean Marine Ecosystem Model Ensemble (SOMEME) contributing to the FishMIP 2.0 regional model intercomparison initiative. One of the challenges hampering progress of regional MEM ensembles is achieving the balance of global standardised inputs with regional relevance. As a first step, we design a SOMEME simulation protocol, that builds on and extends the existing FishMIP framework, in stages that include: detailed skill assessment of climate forcing variables for Southern Ocean regions, extension of fishing forcing data to include whaling, and new simulations that assess ecological links to sea-ice processes in an ensemble of candidate regional MEMs. These extensions will help advance assessments of urgently needed climate change impacts on Southern Ocean ecosystems.