A unique phenomenon {\textendash} merging of Equatorial Ionization Anomaly (EIA) crests, leading to an X-pattern (EIA-X) around the magnetic equator {\textendash} has been observed in the night-time ionospheric measurements by the Global-scale Observations of the Limb and Disk (GOLD) mission. A whole atmospheric general circulation model simulation reproduces this pattern. The pattern is also produced in an assimilative ionosphere model that assimilates slant Total Electron Content (slant-TEC) from Global Navigation Satellite System (GNSS) and Constellation Observing System for Meteorology, Ionosphere, and Climate 2 (COSMIC-2). Due to the observed similarity between measurements and simulations, the latter is used to diagnose this heretofore unexplained phenomenon. The simulation shows that the EIA-X occurs in the afternoon to evening sector at a longitude where the vertical drift is negative, which is a necessary but not sufficient condition. The simulation was performed under constant low-solar and quiescent-geomagnetic forcing conditions, therefore we suggest that one of the drivers of this phenomenon is from lower-atmospheric processes.