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3D phenotyping of peach tree canopy architecture using terrestrial laser scanning
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  • Jordan Knapp-Wilson,
  • Rafael Bohn Reckziegel,
  • Alexander Bucksch,
  • Dario J Chavez
Jordan Knapp-Wilson
University of Georgia

Corresponding Author:[email protected]

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Rafael Bohn Reckziegel
University of Freiburg
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Alexander Bucksch
University of Georgia
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Dario J Chavez
University of Georgia
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Abstract

Throughout history, pomologists have developed various trainings systems for temperate fruit trees to improve light interception, fruit yield, and fruit quality. To achieve this, these training systems enforce certain branch and canopy morphologies upon the tree. Quantifying architecture could aid the selection for trees that require less pruning or naturally excel in specific growing/training system conditions. Tree architecture is also directly associated with resource optimization, funneling what nutrients the plant absorbs into the most efficient, high-yielding configuration possible. In peaches [Prunus persica (L.) Batsch], branching indices (BIs) have been developed in attempts to quantify tree architecture. BIs can effectively focus on a particular area of tree architecture (e.g., an index focused on branching density, or BDi), producing quantitative measurements that can accurately represent a tree’s unique architecture. However, the required branching data to develop these indices is hard to collect. Historically, branching data has been collected manually. Often this process is tedious, time-consuming, and prone to human error. These barriers can be circumnavigated by utilizing 3D remote imaging technology, such as terrestrial LiDAR scanning (tLiDAR). To test this, young peach trees were scanned with 3D scanners and modeled using TreeQSM. This allowed us to collect branching data with which to calculate BDi values. Statistical analyses of BDi measurements from the 4 young trees will create a methodological pipeline with which mature and complex trees architectures may be simulated. These BDi values, either in young or adult trees, will be used to better phenotype trees’ architecture and to better select trees for further breeding and selection (i.e. future genomic studies - GWAS and novel QTL identification). Keywords: Plant Breeding, Computational Biology, Phenomics, Phenotyping, Bioinformatics, 3D modelling, tLiDAR