As above, so below? Quantification of naturally occurring maize diseases
using ground-based visual assessments and UAS-based high-throughput
phenotyping
Abstract
Ground-based visual assessments of co-occurring foliar diseases are
time-consuming, laborious, and subjective due to the spatiotemporal
overlapping of different lesion types and patterns. We took advantage of
this scenario to explore the feasibility of unmanned aircraft systems
(UAS)-derived multispectral vegetation indices to measure the variable
incidence and severity of a mix of diseases. We rated separately the
disease severity (as percent DLA or AUDPC) of artificially inoculated
northern leaf blight (NLBart) along with naturally occurring northern
leaf spot (NLSnat) and anthracnose leaf blight (ALBnat) in near-isogenic
inbred (NILinbreds) and single-cross hybrid (NILhybrids) lines in
Aurora, NY in 2018 ad 2019. NLBart and ALBnat were also scored in a
contiguous field with a population of maize hybrids with broad genetic
base. Total disease severity (tDSground) was estimated from the sum of
the scored diseases. Disease severity and grain yield (GYground) were
recorded from replicated 2-row plots. Two or three asynchronous UAS
flights (no overlapping with ground-based visual estimates of each
disease severity) were conducted in each crop season and plot-level
vegetation indices (VIsair) were extracted from UAS-derived
orthomosaics. Goodness of fit (R^2) between VIsair and tDSground were
low (0-0.3) in the three germplasm groups. R^2 values between
GYground and VIsair were higher (0.2-0.8) than those between GYground
and tDSground (0.1-0.4). Our preliminary results highlight the
challenges of dealing with a realistic field situation where the
uncertain dynamics of a mix of pathogens and the contrasting
perspectives (air vs. ground) involved in the disease screening add
complexity that needs to be studied.