Multivariate regression tree (MRT) |
multiresponse extention of
classification and regression tree (CART) |
mvpart (discont.) |
Nieto-Lugilde et al 2018, Norberg et al 2019 |
Multiresponse multivariate adaptive regression splines (MMARS) |
multiresponse version of multivariate adaptive regression splines (MARS) |
MDA, EARTH |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Constrained linear ordination (CLO) |
similar to generalized linear
model (GLM) |
VGAM |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Constrained quadratic ordination (CQO) |
generalized linear model (GLM)
with quadratic response |
VGAM |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Constrained additive ordination (CAO) |
similar to generalized additive
model (GAM) |
VGAM |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Multiresponse artificial neural networks (MANN) |
a type of machine
learning |
NNET, neuralnet |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Multivariate stochastic neural network (MISTN) |
a type of machine
learning |
MISTNET |
Harris 2015, Nieto-Lugilde et al 2018, Norberg et
al 2019, Zhang et al 2018 |
Hierarchical Bayesian Modelling (HBM) |
a relatively newer application
of Bayesian algorithms |
spBayes, BayesComm, HMSC, boral, or rosalia |
D’Amen et al 2017, Nieto-Lugilde et al 2018, Norberg et al 2019,
Ovaskainen et al 2017, Warton et al (2015), Wilkenson et al 2019, Zhang
et al 2018 |
Latent variable model (LVM) |
Bayesian implementation; overlap with HBM |
R2jags, gllvm |
Hui et al 2015, Warton et al 2015, Ovaskainen et al
2017 |
Generalized dissimilarity modelling (GDM) |
use continuous functions to
model community patterns by considering variation in species along
environmental gradients |
gdm |
D’Amen et al 2017, Nieto-Lugilde et al
2018, Norberg et al 2019 |
Gradient forest (GF) |
community level extension of Random Forest |
gradientForest |
Nieto-Lugilde et al 2018, Norberg et al
2019 |
Region of common profile (RCP) |
Less frequently applied in ecology |
RCPmod |
Lyons et al 2017 |
Generalized joint attribute modelling (GJAM) |
not commonly applied;
conflicting evidence on predictive performance (Zhang et al 2018) |
gjam |
Zhang et al 2018, Norberg et al 2019 |