|
Sites
|
Genotypes
|
Site
mismatch rate
|
Genotype mismatch rate
|
FreeBayes |
1.19x105
|
1.05x107
|
1.03x10-2
|
2.39x10-3
|
HaplotypeCaller |
2.24x106
|
1.87x108
|
2.41x10-1
|
1.18x10-2
|
SAMtools |
4.59x105
|
4.16x107
|
5.36x10-2
|
3.08x10-3
|
UnifiedGenotyper |
3.49x106
|
2.86x108
|
1.51x10-1
|
2.03x10-2
|
VarScan |
8.79x104
|
4.41x106
|
9.79x10-4
|
3.97x10-4
|