Hi-C library sequencing and chromosome anchoring
The Hi-C library was prepared using standard procedures, it yielded a
total of 430 Million reads (65 Gb). The Hi-C reads were first mapped to
the above draft genome using Juicer
(Durand et al., 2016). Hi-C association
chromosome assembly was conducted with the 3D-DNA pipeline
(Dudchenko et al., 2017). Simultaneously,
the completeness of genes was also assessed using BUSCO
(Simao, Waterhouse, Ioannidis,
Kriventseva, & Zdobnov, 2015). The detailed description in File S1.