Acknowledgments
For support in long-read Oxford Nanopore sequencing, we thank Dr. Sara
Goodwin from Cold Spring Harbor Laboratories. L.M.D. was supported, in
part, by NSF-DEB 1838273, NSF-DGE 1633299, with S.J.R by NSF-DEB
1442142, and with A.M.B. by NSF-IOS 2032063 and 2031906. D.A.R. and
D.D.M.S. were supported, in part, by NSF-DEB 1838283, and NSF-IOS
2032006. A.P.C was supported, in part, by NSF-IOS 2032011 and 2031926.
T.M.L was supported by NSF-PRFB 2010853. L.R.Y. was supported by NSF-IOS
2032073 and NSF-DBI 1812035. E.C.T. was supported in part by an Irish
Research Council Laureate Award IRCLA/2017/58.
SCV was supported by a Max Planck
Research Group awarded by the Max Planck Gesellschaft, a Human Frontiers
Science Program Grant (RGP0058/2016) and a UKRI Future Leaders
Fellowship (MR/T021985/1). The authors would like to thank Stony Brook
Research Computing and Cyberinfrastructure, and the Institute for
Advanced Computational Science at Stony Brook University for access to
the high-performance SeaWulf computing system, which was made possible
by a $1.4M National Science Foundation grant (#1531492). The
High-Performance Computing Center at Texas Tech University and The
Scientific Computing Department at the Instituto de Ecología,
Universidad Nacional Autónoma de México provided computational
infrastructure and technical support throughout the work.